expand.to.new.infection.proportions: Shoehorn a given population array into an array of the...

In tfojo1/jheem: Executes the JHEEM (Johns Hopkins Epidemiological and Economic Model) - a compartmental model of HIV

Shoehorn a given population array into an array of the dimensions for new infection proportions

Description

Returns an array with dimensions and dimnames for the new infection proportions array, such that every element in the returned array is drawn from the population.to.expand array

Usage

expand.to.new.infection.proportions(jheem, to.expand)

Arguments

jheem	An object of jheem-class
to.expand	An array representing the population to expand. dimnames(population.to.expand) must be a subset of the dimnames of the HIV-negative population and/or the dimnames of the HIV-positive population: [age, race, subpopulation, sex, risk, non.hiv.subset, continuum, cd4, hiv.subset]

Details

A new infection proportions array should have dimensions [age, race, subpopulation, sex, risk, non.hiv.subset, continuum, cd4, hiv.subset]. For each combination of age x race x subpopulation x sex x risk x non.hiv.subset, proportions[age,race,subpopulation,sex,risk,non.hiv.subset,,,] should sum to 1 and represent the proportions according to which new infections from the age x race x subpopulation x sex x risk x non.hiv.subset are distributed across strata of continuum x cd4 x hiv.subset

tfojo1/jheem documentation built on Oct. 7, 2022, 1:24 p.m.