get.seeded.initial.populations: Get a pair of seeded initial states

In tfojo1/jheem: Executes the JHEEM (Johns Hopkins Epidemiological and Economic Model) - a compartmental model of HIV

Get a pair of seeded initial states

Description

Seeds cases into an HIV-positive population, and subtracts those cases from the corresponding strata in the HIV-negative population

Usage

get.seeded.initial.populations(
  jheem,
  nonhiv.init,
  cases.per = 1,
  seed.to.ages = jheem$age$labels[ceiling(length(jheem$age$labels)/2)],
  seed.to.races = jheem$race[1],
  seed.to.subpopulations = jheem$subpopulations[1],
  seed.to.sexes = jheem$sex[1],
  seed.to.risk.strata = jheem$risk.strata[1],
  seed.to.continuum.of.care = jheem$continuum.of.care[1],
  seed.to.cd4 = jheem$cd4.strata[1],
  seed.to.hiv.subset = jheem$hiv.subsets[1],
  seed.from.non.hiv.subset = jheem$nonhiv.subsets[1]
)

Arguments

jheem	An object of jheem-class
seed.to.ages	The age strata into which cases will be seeded
seed.to.races	The races into which cases will be seeded
seed.to.risk.strata	The sex*risk strata into which cases will be seeded
cases.per.subpopulation	Either (1) a numeric vector with length the number of subpopulations, where each value represents the number of cases to be seeded into each subpopulation, or (2) a single number, which will be the number of cases seeded into each subpopulation

See Also

set.initial.state.hiv, get.hiv.negative.population.skeleton

tfojo1/jheem documentation built on Oct. 7, 2022, 1:24 p.m.