Man pages for tgac-vumc/CSSA
Analysis and Simulation Tools for CRISPR-Cas9 Pooled Screens
| CRISPRsim | Simulate a CRISPR-Cas9 pooled screen |
| CSSA-package | CSSA: Analysis and Simulation Tools for CRISPR-Cas9 Pooled... |
| degrep | Derive growth-modifying effect of gene knockout in pooled... |
| doublejar | Rate ratios of rate ratios after adding an artificial number... |
| ess | Get a list of essential genes or corresponding indices in the... |
| geneodds | Calculate odds per gene |
| getdeg | Derive growth-modifying effect of gene knockout in pooled... |
| geteffect | Approximate effect of gene knockout on growth |
| jar | Rate ratios after adding an artificial number to all features |
| nestedradjust | Calculate rate ratios of rate ratios restricted by confidence... |
| noness | Get a list of nonessential genes or corresponding indices in... |
| odds2pq | Calculate p-values and q-values for odds |
| oddscores | Calculate odds per guide |
| r2Z | Convert rate ratios to Z-values |
| radjust | Calculate rate ratios restricted by confidence level |
| rrep | Calculate rate ratios with standard error of count data based... |
| sortingsim | Simulate a selection-based CRISPR-Cas9 pooled screen |
| sumZ | Calculate corrected summed Z-values per gene |
