ess: Get a list of essential genes or corresponding indices in the...

Description Usage Arguments Value Note Author(s) See Also

View source: R/CSSA.R

Description

ess couples reported essential genes to a data set. Without arguments, it returns the list of essential genes. Otherwise, it returns the indices corresponding to essential genes.

Usage

1
ess(guides, genes, trnc = "_.*")

Arguments

guides

Character vector. List of guide names. Names of essential genes are matched to the string before what is specified in the trnc argument.

genes

Character vector. List of gene names. Names of essential genes are matched to the given gene names. Matches must be exact.

trnc

Character. Regular expression pattern to isolate gene name from the guide name. Default = "_.*"

Value

Returns a character vector with names of essential genes, or a numeric vector with indices representing essential genes in the given data set.

Note

The list of essential genes was retrieved from http://hart-lab.org/downloads.

Author(s)

Jos B. Poell

See Also

noness


tgac-vumc/CSSA documentation built on Dec. 14, 2019, 9:40 p.m.