ess | R Documentation |
ess couples reported essential genes to a data set. Without arguments, it returns the list of essential genes. Otherwise, it returns the indices corresponding to essential genes.
ess(guides, genes, trnc = "_.*")
guides |
Character vector. List of guide names. Names of essential genes are matched to the string before what is specified in the trnc argument. |
genes |
Character vector. List of gene names. Names of essential genes are matched to the given gene names. Matches must be exact. |
trnc |
Character. Regular expression pattern to isolate gene name from the guide name. Default = "_.*" |
Returns a character vector with names of essential genes, or a numeric vector with indices representing essential genes in the given data set.
The list of essential genes was retrieved from http://hart-lab.org/downloads.
Jos B. Poell
noness
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