sysargs: SYSargs accessor methods

Description Usage Arguments Value Author(s) Examples

Description

Methods to access information from SYSargs object.

Usage

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	sysargs(x)

Arguments

x

object of class SYSargs

Value

various outputs

Author(s)

Thomas Girke

Examples

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## Construct SYSargs object from param and targets files 
param <- system.file("extdata", "hisat2.param", package="systemPipeR")
targets <- system.file("extdata", "targets.txt", package="systemPipeR")
args <- systemArgs(sysma=param, mytargets=targets)
args
names(args); modules(args); cores(args); outpaths(args); sysargs(args)

tgirke/systemPipeR documentation built on Sept. 18, 2021, 12:03 p.m.