entrez_to_attribute: Obtain gene annotations
In tgrimes/miscgene: Miscellaneous functions for obtaining gene features.
Description
Usage
Arguments
Value
Description
Obtain gene annotations
Usage
1
2
entrez_to_attribute(df, species, attribute, dir_annotation = getwd(),
verbose = TRUE)
Arguments
df
A data.frame containing a column named "entrezgene_id".
species
One of "mouse" or "human".
attribute
A gene attribute. Examples include: "gene_biotype",
"description", "chromosome_name", etc. See listAttributes() for
more options.
dir_annotation
The directory to store annotation reference.
verbose
Set to FALSE to avoid messages.
Value
The data.frame df with an added column containing gene symbols.
tgrimes/miscgene documentation built on May 24, 2020, 5:31 a.m.
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Description Usage Arguments Value
Description
Obtain gene annotations
Usage
1 2 | entrez_to_attribute(df, species, attribute, dir_annotation = getwd(),
verbose = TRUE)
|
Arguments
df |
A data.frame containing a column named "entrezgene_id". |
species |
One of "mouse" or "human". |
attribute |
A gene attribute. Examples include: "gene_biotype", "description", "chromosome_name", etc. See listAttributes() for more options. |
dir_annotation |
The directory to store annotation reference. |
verbose |
Set to FALSE to avoid messages. |
Value
The data.frame df with an added column containing gene symbols.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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