get_reactome_pathways: Obtain reactome pathways
In tgrimes/miscgene: Miscellaneous functions for obtaining gene features.
Description
Usage
Arguments
Value
View source: R/get_reactome_pathways.R
Description
Obtain reactome pathways
Usage
1
2
get_reactome_pathways(species = c("human", "mouse"), file_name = NULL,
dir_reactome = getwd())
Arguments
species
One of "mouse" or "human".
file_name
The file name for pathway data. If null, defaults to
"reactome_[species].rds".
dir_reactome
The directory to store the pathway data. Defaults to
the current working directory.
Value
A named list of vectors. Each vector corresponds to a Reactome pathway
and contains the entrezgene IDs of the genes in that pathway.
tgrimes/miscgene documentation built on May 24, 2020, 5:31 a.m.
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Description Usage Arguments Value
View source: R/get_reactome_pathways.R
Description
Obtain reactome pathways
Usage
1 2 | get_reactome_pathways(species = c("human", "mouse"), file_name = NULL,
dir_reactome = getwd())
|
Arguments
species |
One of "mouse" or "human". |
file_name |
The file name for pathway data. If null, defaults to "reactome_[species].rds". |
dir_reactome |
The directory to store the pathway data. Defaults to the current working directory. |
Value
A named list of vectors. Each vector corresponds to a Reactome pathway and contains the entrezgene IDs of the genes in that pathway.
R Package Documentation
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We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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