centerSpatialAnnotation: Center the borders of a spatial annotation

In theMILOlab/SPATA2: A Toolbox for Spatial Expression Analysis

Center the borders of a spatial annotation

Description

Shifts the borders of a spatial annotation in a way that its center corresponds to the input of c(center_x, center_y).

Usage

centerSpatialAnnotation(object, ...)

## S4 method for signature 'SPATA2'
centerSpatialAnnotation(
  object,
  id,
  center_x,
  center_y,
  new_id = FALSE,
  overwrite = FALSE
)

## S4 method for signature 'SpatialData'
centerSpatialAnnotation(
  object,
  id,
  center_x,
  center_y,
  new_id = FALSE,
  overwrite = FALSE
)

Arguments

object	An object of class SPATA2 or, in case of S4 generics, objects of classes for which a method has been defined.
...	Used to absorb deprecated arguments or functions.
id	Character value specifying the ID of the spatial annotation of interest. If there is only one spatial annotation in the object, the function will default to using it. However, if there are multiple annotations, this argument must be explicitly specified to identify the target annotation.
center_x, center_y	Distance measures. The new center of the spatial annotation.
new_id	Character value or FALSE. If character, the resulting spatial annotation is stored under a new ID.
overwrite	Logical value. Must be TRUE to allow overwriting.

Value

The updated input object, containing the added, removed or computed results.

See Also

expandSpatialAnnotation(), shiftSpatialAnnotation(), smoothSpatialAnnotation(), SpatialAnnotation

theMILOlab/SPATA2 documentation built on Feb. 8, 2025, 11:41 p.m.