computeChromosomalInstability: Compute chromosomal damage
In theMILOlab/SPATA2: A Toolbox for Spatial Expression Analysis
computeChromosomalInstability R Documentation
Compute chromosomal damage
Description
Estimates the degree of chromosomal damage of each observation
by computing the variance of copy number variations across chromosomes 1-22.
(Requires the results of runCNV()).
Usage
computeChromosomalInstability(object, chr_vars = stringr::str_c("Chr", 1:22))
Arguments
object
An object of class SPATA2 or, in case of S4 generics,
objects of classes for which a method has been defined.
chr_vars
Character vector. Names of the meta features that contain the
copy number variation scores for each chromosome.
Value
The updated input object, containing the added, removed or computed results.
theMILOlab/SPATA2 documentation built on Feb. 8, 2025, 11:41 p.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
| computeChromosomalInstability | R Documentation |
Compute chromosomal damage
Description
Estimates the degree of chromosomal damage of each observation by computing the variance of copy number variations across chromosomes 1-22.
(Requires the results of runCNV()).
Usage
computeChromosomalInstability(object, chr_vars = stringr::str_c("Chr", 1:22))
Arguments
object |
An object of class |
chr_vars |
Character vector. Names of the meta features that contain the copy number variation scores for each chromosome. |
Value
The updated input object, containing the added, removed or computed results.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.