concept_spatial_trajectory: Spatial Gradient Screening
In theMILOlab/SPATA2: A Toolbox for Spatial Expression Analysis
concept_spatial_trajectory R Documentation
Spatial Gradient Screening
Description
Spatial Gradient Screening conceptualizes changes in gene expression or,
generally speaking, changes in expression of numeric features as a continuum in
two dimensional space. It uses spatial annotations
or spatial trajectories as references that
are indicative of biological forces to analyse gene expression changes dependent
on the distance to these forces.
Please refer to Kueckelhaus J., Frerichs S. et al., 2024 for a detailed
explanation.
A spatial trajectory is a linear segment with a start and an
end point which indicates a 'direction'. It can be used within the
framework of Spatial Gradient Screening (SGS)
as a spatial reference to abstract biological forces such as tumorous growth,
increasing cellular density or proximity to a border.
theMILOlab/SPATA2 documentation built on Feb. 8, 2025, 11:41 p.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
| concept_spatial_trajectory | R Documentation |
Spatial Gradient Screening
Description
Spatial Gradient Screening conceptualizes changes in gene expression or, generally speaking, changes in expression of numeric features as a continuum in two dimensional space. It uses spatial annotations or spatial trajectories as references that are indicative of biological forces to analyse gene expression changes dependent on the distance to these forces.
Please refer to Kueckelhaus J., Frerichs S. et al., 2024 for a detailed explanation.
A spatial trajectory is a linear segment with a start and an end point which indicates a 'direction'. It can be used within the framework of Spatial Gradient Screening (SGS) as a spatial reference to abstract biological forces such as tumorous growth, increasing cellular density or proximity to a border.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.