containsTissueOutline: Check availability of tissue outline

In theMILOlab/SPATA2: A Toolbox for Spatial Expression Analysis

Check availability of tissue outline

Description

Tests if the object contains tissue outline as identified by identifyTissueOutline().

Usage

containsTissueOutline(object, ...)

## S4 method for signature 'SPATA2'
containsTissueOutline(
  object,
  method = NULL,
  img_name = activeImage(object),
  error = FALSE
)

## S4 method for signature 'SpatialData'
containsTissueOutline(
  object,
  method = NULL,
  img_name = activeImage(object),
  error = FALSE
)

## S4 method for signature 'HistoImage'
containsTissueOutline(object, img_name = activeImage(object), error = FALSE)

Arguments

object	An object of class SPATA2 or, in case of S4 generics, objects of classes for which a method has been defined.
...	Used to absorb deprecated arguments or functions.
img_name	Character value. The name of the image of interest. If NULL, the active image is chosen by default. Either way, must be one of getImageNames().
error	Logical. If TRUE and the input is invalid the function throws an error.

Value

Logical value.

theMILOlab/SPATA2 documentation built on Feb. 8, 2025, 11:41 p.m.