createImageAnnotations: Create spatial annotations based on histo-morphological...

In theMILOlab/SPATA2: A Toolbox for Spatial Expression Analysis

Create spatial annotations based on histo-morphological features

Description

Opens an interface in which the user can interactively outline histomorphological features of an image. The outline created this way is used to create a SpatialAnnotation of subclass ImageAnnotation.

Not to confuse with createSpatialSegmentation().

Usage

createImageAnnotations(object, ...)

Arguments

object	An object of class SPATA2 or, in case of S4 generics, objects of classes for which a method has been defined.
...	Used to absorb deprecated arguments or functions.

Value

The updated input object, containing the added, removed or computed results.

See Also

addSpatialAnnotation(), mergeWithTissueOutline()

Examples

library(SPATA2)

data("example_data")

object <- example_data$object_UKF275T_diet

object <- createImageAnnotations(object)

theMILOlab/SPATA2 documentation built on Feb. 8, 2025, 11:41 p.m.