downloadFromPublication: Download data from publications

In theMILOlab/SPATA2: A Toolbox for Spatial Expression Analysis

Download data from publications

Description

Downloads processed data as used in publications revolving around SPATA2. See details for valid input options.

Usage

downloadFromPublication(pub, sample_name)

Arguments

pub	Character value. The publication of interest.
id	Character value. The id of the data object of interest.

Details

The following data can be downloaded.

From Kueckelhaus et al., 2024 with pub = 'Kueckelhaus_et_al_2024'.

• id = 'UKF313T'An object of class SPATA2 containing human glioblastoma Visium data.

• id = 'UKF269T'An object of class SPATA2 containing human glioblastoma Visium data.

• id = 'UKF265C'An object of class SPATA2 containing human neocortex Visium data.

• id = 'MCI_LMU'An object of class SPATA2 containing injured mouse cortex Visium data.

Value

Depends argument input.

Examples

  # download the processed SPATA2 object from sample UKF313T from Kueckelhaus et al., 2024.
 objectT313 <- downloadFromPublication(pub = "kueckelhaus_et_al_2024", what = "UKF313T")

theMILOlab/SPATA2 documentation built on Feb. 8, 2025, 11:41 p.m.