getBarcodeSpotDistances: Obtain distances between barcodes

In theMILOlab/SPATA2: A Toolbox for Spatial Expression Analysis

Obtain distances between barcodes

Description

Obtain distances between barcodes

Usage

getBarcodeSpotDistances(
  object,
  barcodes = NULL,
  unit = "pixel",
  arrange = FALSE,
  verbose = NULL
)

Arguments

object	An object of class SPATA2 or, in case of S4 generics, objects of classes for which a method has been defined.
unit	Character value. Specifies the desired unit in which distance measures or area measures are provided. Run validUnitsOfLength() or validUnitsOfArea() for valid input options.
verbose	Logical. If TRUE, informative messages regarding the computational progress will be printed. (Warning messages will always be printed.)
barcdoes	Character vector or NULL. If character, only input barcodes are considered.

Value

A data.frame in which each observation/row corresponds to a barcodes-spot ~ barcode-spot pair.

theMILOlab/SPATA2 documentation built on Feb. 8, 2025, 11:41 p.m.