getDeaLfcName: Obtain LFC name
In theMILOlab/SPATA2: A Toolbox for Spatial Expression Analysis
getDeaLfcName R Documentation
Obtain LFC name
Description
Extracts name of variable that contains log fold change results
of DEA.
Usage
getDeaLfcName(object, across = getDefaultGrouping(object), method_de = NULL)
Arguments
object
An object of class SPATA2 or, in case of S4 generics,
objects of classes for which a method has been defined.
across
Character value or NULL. Specifies the grouping variable of interest.
Use getGroupingOptions() to obtain all variable names that group the
barcode spots of your object in a certain manner.
method_de
Character value. Denotes the method to according to which the de-analysis is performed.
Given to argument test.use of the Seurat::FindAllMarkers()-function. Run SPATA::dea_methods
to obtain all valid input options.
Value
Character value.
theMILOlab/SPATA2 documentation built on Feb. 8, 2025, 11:41 p.m.
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| getDeaLfcName | R Documentation |
Obtain LFC name
Description
Extracts name of variable that contains log fold change results of DEA.
Usage
getDeaLfcName(object, across = getDefaultGrouping(object), method_de = NULL)
Arguments
object |
An object of class |
across |
Character value or NULL. Specifies the grouping variable of interest. Use |
method_de |
Character value. Denotes the method to according to which the de-analysis is performed.
Given to argument |
Value
Character value.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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