getMoleculeCoordinates: Obtain molecule coordinates

In theMILOlab/SPATA2: A Toolbox for Spatial Expression Analysis

Obtain molecule coordinates

Description

Extracts the molecule coordinates of a specfific assay.

Usage

getMoleculeCoordinates(
  object,
  molecules = NULL,
  assay_name = activeAssay(object)
)

Arguments

object	An object of class SPATA2 or, in case of S4 generics, objects of classes for which a method has been defined.
molecules	Character or NULL. If character, specifies the molecules of interest and the output data.frame is filtered accordingly.
assay_name	Only relevant if the SPATA2 object contains more than one assay: Denotes the assay of interest and thus the molecular modality to use. Defaults to the active assay as set by activateAssay().

Value

Data.frame with variables molecule, x_orig, x, y_orig, y.

theMILOlab/SPATA2 documentation built on Feb. 8, 2025, 11:41 p.m.