getSignatureOverview: Overview about the current signature collection

In theMILOlab/SPATA2: A Toolbox for Spatial Expression Analysis

Overview about the current signature collection

Description

Counts the number of signatures by class - after subsetting if desired.

Usage

getGeneSetOverview(object, ...)

getMetaboliteOverview(object, ...)

getProteinSetOverview(object, ...)

getSignatureOverview(object, ..., assay_name = activeAssay(object))

Arguments

object	An object of class SPATA2 or, in case of S4 generics, objects of classes for which a method has been defined.
...	Additional selection helpers from the tidyselect package that match names according to a given pattern.
assay_name	Only relevant if the SPATA2 object contains more than one assay: Denotes the assay of interest and thus the molecular modality to use. Defaults to the active assay as set by activateAssay().

Value

A data.frame with two variables Class and Available Signatures indicating the number of different signatures the classes contain.

theMILOlab/SPATA2 documentation built on Feb. 8, 2025, 11:41 p.m.