joinWith: Join barcodes with additional variables

In theMILOlab/SPATA2: A Toolbox for Spatial Expression Analysis

Join barcodes with additional variables

Description

These functions have been deprecated in favor of joinWithVariables().

Usage

joinWith(
  object,
  spata_df = getCoordsDf(object),
  features = NULL,
  gene_sets = NULL,
  method_gs = NULL,
  genes = NULL,
  smooth = FALSE,
  smooth_span = NULL,
  verbose = NULL,
  normalize = NULL,
  ...
)

joinWithFeatures(
  object,
  spata_df = getCoordsDf(object),
  features,
  smooth = FALSE,
  smooth_span = 0.02,
  verbose = TRUE,
  ...
)

joinWithGenes(
  object,
  spata_df = getCoordsDf(object),
  genes,
  average_genes = FALSE,
  uniform_genes = "keep",
  smooth = FALSE,
  smooth_span = 0.02,
  normalize = TRUE,
  verbose = NULL,
  ...
)

joinWithGeneSets(
  object,
  spata_df = getCoordsDf(object),
  gene_sets,
  method_gs = "mean",
  smooth = FALSE,
  smooth_span = 0.02,
  normalize = TRUE,
  verbose = TRUE,
  ignore = T,
  ...
)

theMILOlab/SPATA2 documentation built on Feb. 8, 2025, 11:41 p.m.