plotLoglik: Plot Bayes Space logliks
In theMILOlab/SPATA2: A Toolbox for Spatial Expression Analysis
plotLoglik R Documentation
Plot Bayes Space logliks
Description
Visualizes the results of BayesSpace::qTune() to determine
the optimal number of clusters.
Usage
plotLoglik(object, elbow = TRUE)
Arguments
object
An object of class SPATA2 or, in case of S4 generics,
objects of classes for which a method has been defined.
Details
For this function to work the results of runBayesSpaceClustering()
are required.
Value
A ggplot.
Examples
library(SPATA2)
data("example_data")
object <- example_data$object_UKF275T_diet
# this might take some time...
object <- runBayesSpaceClustering(object, name = "bspace", qs = 3:15)
plotLoglik(object)
theMILOlab/SPATA2 documentation built on Feb. 8, 2025, 11:41 p.m.
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| plotLoglik | R Documentation |
Plot Bayes Space logliks
Description
Visualizes the results of BayesSpace::qTune() to determine
the optimal number of clusters.
Usage
plotLoglik(object, elbow = TRUE)
Arguments
object |
An object of class |
Details
For this function to work the results of runBayesSpaceClustering()
are required.
Value
A ggplot.
Examples
library(SPATA2)
data("example_data")
object <- example_data$object_UKF275T_diet
# this might take some time...
object <- runBayesSpaceClustering(object, name = "bspace", qs = 3:15)
plotLoglik(object)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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