processImage: Run image processing pipeline

In theMILOlab/SPATA2: A Toolbox for Spatial Expression Analysis

Run image processing pipeline

Description

A wrapper around the image processing functions:

• identifyPixelContent()

• identifyTissueOutline()

• identifyBackgroundColor()

Usage

processImage(object, img_name = activeImage(object), verbose = NULL, ...)

Arguments

object	An object of class SPATA2 or, in case of S4 generics, objects of classes for which a method has been defined.
img_name	Character value. The name of the image of interest. If NULL, the active image is chosen by default. Either way, must be one of getImageNames().
verbose	Logical. If TRUE, informative messages regarding the computational progress will be printed. (Warning messages will always be printed.)
...	Arguments passed to identifyPixelContent().

Value

The updated input object, containing the added, removed or computed results.

theMILOlab/SPATA2 documentation built on Feb. 8, 2025, 11:41 p.m.