reduceSpataObject: Reduce SPATA2 object
In theMILOlab/SPATA2: A Toolbox for Spatial Expression Analysis
reduceSpataObject R Documentation
Reduce SPATA2 object
Description
This function reduces a SPATA2 object to a minimal version by
removing analysis progress and other non-essential data.
Usage
reduceSpataObject(object)
Arguments
object
An object of class SPATA2 or, in case of S4 generics,
objects of classes for which a method has been defined.
Details
The following components are removed or reduced:
@assays: The @analysis and @mtr_proc slots are cleared, and @meta_var is reduced to only include molecule names.
@data_add: Cleared completely.
@dim_red: Cleared completely.
@meta: Only the barcodes column is retained in the metadata.
@spatial:
@annotations: Cleared completely.
@images: The @outline and @pixel_content slots are cleared.
@trajectories: Cleared completely.
@outline: Cleared completely.
Furthermore, all images are unload with unlaodImages().
Value
The updated input object, containing the added, removed or computed results.
Examples
# Assuming 'object' is a valid SPATA2 object
reduced_object <- reduceSpataObject(object)
theMILOlab/SPATA2 documentation built on Feb. 8, 2025, 11:41 p.m.
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| reduceSpataObject | R Documentation |
Reduce SPATA2 object
Description
This function reduces a SPATA2 object to a minimal version by
removing analysis progress and other non-essential data.
Usage
reduceSpataObject(object)
Arguments
object |
An object of class |
Details
The following components are removed or reduced:
@assays: The @analysis and @mtr_proc slots are cleared, and @meta_var is reduced to only include molecule names.
@data_add: Cleared completely.
@dim_red: Cleared completely.
@meta: Only the barcodes column is retained in the metadata.
@spatial:
@annotations: Cleared completely.
@images: The @outline and @pixel_content slots are cleared.
@trajectories: Cleared completely.
@outline: Cleared completely.
Furthermore, all images are unload with
unlaodImages().
Value
The updated input object, containing the added, removed or computed results.
Examples
# Assuming 'object' is a valid SPATA2 object
reduced_object <- reduceSpataObject(object)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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