renameSpatialAnnotation: Rename a spatial annotation

In theMILOlab/SPATA2: A Toolbox for Spatial Expression Analysis

Rename a spatial annotation

Description

Renames spatial annotation.

Usage

renameSpatialAnnotation(object, id, new_id, overwrite = FALSE)

Arguments

object	An object of class SPATA2 or, in case of S4 generics, objects of classes for which a method has been defined.
id	Character value. The current ID of the spatial annotation to be renamed.
new_id	Character value. The new ID of the spatial annotation.
overwrite	Logical value. Must be TRUE to allow overwriting.
inherit	argument_dummy params

Examples

library(SPATA2)

data("example_data")

object <- example_data$object_UKF313T_diet

plotSpatialAnnotations(object)

object <- renameSpatialAnnotation(object, id = "necrotic_area", new_id = "Necrotic_Area_Cap")

plotSpatialAnnotations(object)

theMILOlab/SPATA2 documentation built on Feb. 8, 2025, 11:41 p.m.