whichTissueSection: Tissue section belonging of spatial annotations

In theMILOlab/SPATA2: A Toolbox for Spatial Expression Analysis

Tissue section belonging of spatial annotations

Description

Checks to which tissue section the spatial annotation belongs. (Only required in case of multiple tissue sections per sample.)

Usage

whichTissueSection(object, id)

Arguments

object	An object of class SPATA2 or, in case of S4 generics, objects of classes for which a method has been defined.
id	Character value. The spatial annotation ID of interest.

Value

Character value.

Examples

library(SPATA2)

object <- example_data$object_lmu_mci_diet

object <- identifyTissueOutline(object)

plotSurface(object, color_by = "tissue_section") +
  ggpLayerSpatAnnOutline(object, ids = c("inj1", "inj2"))

whichTissueSection(object, id = "inj1")

whichTissueSection(object, id = "inj2")

theMILOlab/SPATA2 documentation built on Feb. 8, 2025, 11:41 p.m.