plotBatchHeatmap: Visualize possible batch effects

In theMILOlab/cypro: A Toolbox for Analysis of Single Cell Microscopy Data

Visualize possible batch effects

Description

Visualizes the distances of the median well profiles cmoputed by detectBatchEffects() in a not clustered heatmap.

Usage

plotBatchHeatmap(object, clrp = "milo", verbose = NULL, correlated = FALSE)

Arguments

object	A valid cypro object.
clrp	Character value. Specifies the color palette to be used to represent groups of discrete variables. Run validColorPalettes() to obtain valid input options.
verbose	Logical. If set to TRUE informative messages regarding the computational progress will be printed. (Warning messages will always be printed.)
correlated	Logical value. If set to TRUE the correlation results of the distance matrix are used as input for the heatmap.

Value

A heatmap as output from pheatmap::pheatmap().

theMILOlab/cypro documentation built on April 5, 2022, 2:03 a.m.