plotSingleTracks: Plot single cell migration

In theMILOlab/cypro: A Toolbox for Analysis of Single Cell Microscopy Data

Plot single cell migration

Description

Visualizes the migration of single cells of interest.

Usage

plotSingleTracks(
  object,
  cell_ids,
  phase = "all",
  size = 1,
  color_by = NULL,
  scales = "free"
)

Arguments

object	A valid cypro object.
cell_ids	Character vector. Denotes the cell ids of interest.
phase	Character or numeric. If character, the ordinal value referring to the phase of interest (e.g. 'first', 'second' etc.). referring to the phase of interest or 'all'. If numeric, the number referring to the phase. If set to NULL takes the phase denoted as default with adjustDefault(). Ignored if the experiment design contains only one phase.
scales	Given to ggplot2::facet_wrap(). Affects the way the subplots are displayed.

Value

A ggplot.

theMILOlab/cypro documentation built on April 5, 2022, 2:03 a.m.