run_dim_red: Title

In theMILOlab/cypro: A Toolbox for Analysis of Single Cell Microscopy Data

Title

Description

Title

Usage

run_dim_red(
  object,
  variable_set,
  phase = NULL,
  method_dim_red = "pca",
  force = FALSE,
  set_seed = NULL,
  verbose = NULL,
  ...
)

Arguments

object	A valid cypro object.
variable_set	Character value. Denotes the variable set of interest. Use getVariableSetNames() to obtain all names of currently stored variable sets in your object.
phase	Character or numeric. If character, the ordinal value referring to the phase of interest (e.g. 'first', 'second' etc.). referring to the phase of interest or 'all'. If numeric, the number referring to the phase. If set to NULL takes the phase denoted as default with adjustDefault(). Ignored if the experiment design contains only one phase.
force	Logical value. Needs to be set to TRUE if you want to overwrite an already existing set up or already existing results.
verbose	Logical. If set to TRUE informative messages regarding the computational progress will be printed. (Warning messages will always be printed.)

theMILOlab/cypro documentation built on April 5, 2022, 2:03 a.m.