setClusterConv: Set analysis objects

In theMILOlab/cypro: A Toolbox for Analysis of Single Cell Microscopy Data

Set analysis objects

Description

Sets a convenient object and empties its data slot.

Usage

setClusterConv(object, cluster_object, method, variable_set, phase)

setDimRedConv(object, dim_red_object, method, variable_set, phase)

setCorrConv(object, corr_object, variable_set, phase)

Arguments

object	A valid cypro object.
variable_set	Character value. Denotes the variable set of interest. Use getVariableSetNames() to obtain all names of currently stored variable sets in your object.
phase	Character or numeric. If character, the ordinal value referring to the phase of interest (e.g. 'first', 'second' etc.). referring to the phase of interest or 'all'. If numeric, the number referring to the phase. If set to NULL takes the phase denoted as default with adjustDefault(). Ignored if the experiment design contains only one phase.

Value

An updated version of the input cypro-object.

theMILOlab/cypro documentation built on April 5, 2022, 2:03 a.m.