joint_from_ids: conditional_from_ids

In theboocock/coco: Correlation-based conditional analysis

Description

Joint from ids conditional wrapper

Usage

joint_from_ids(res_preparation, rsids = NULL, idxs = NULL,
  return_only_these = F, joint = T, exact = F)

Arguments

rsids	character vector - SNPIDs in res preparation to perform CoCo analysis on.
idxs	integer vector - postiion in input data to condition on.
return_only_these	boolean (T) = return the joint or conditional statistics for only SNPs in idxs or rsids vectors. (F) = return the joint or conditional statistics for SNPs not in the idxs or rsids vectors.
joint	boolean (T) = perform joint estimation. (F) = perform conditional estimation
res_prepration	coco_data - the result of running the coco prep_dataset_common command.

Details

joint_from_idxs Performs a joint or conditional signals from a specific set of SNPs, or indexes.

Author(s)

James Boocock and Eli Stahl

Examples

data(coco_nek1)
res = joint_from_ids(rsids="rs10520157",coco_nek1,exact=T)
# Second hit rs4417927
res$res_step[res$res_step$rsid == "rs4417927",]

theboocock/coco documentation built on May 31, 2019, 9:10 a.m.