prep_dataset_coco: estimate_vary

In theboocock/coco: Correlation-based conditional analysis

Description

Prepare dataset coco.

Usage

prep_dataset_coco(data_set, ld_matrix, var_y, hwe_variance = F, exact = F,
  use_info = T)

Arguments

data_set	data.frame. Coco formatted input data.
ld_matrix	matrix. LD matrix ordered by postiion.
var_y	float. Phenotypic variance for Y, if not specified it will be estimated using estimate_vary.
hwe_variance	boolean. Force the use of Hardy-weinberg equillibrium when calculating the genotypic variance.
exact	boolean. Perform an exact analysis, extra data checks used in prep_data_set_common

Details

prep_dataset_coco Common processing function for checking and parsing a dataset.

Author(s)

James Boocock

Examples

data(coco_dataset)
data(coco_ld_matrix)
coco_data = prep_datset_coco(coco_dataset,coco_ld_matrix)
coco_data$var_y

theboocock/coco documentation built on May 31, 2019, 9:10 a.m.