readGFFs: readGFFs

In thebustalab/phylochemistry: Chemical and Sequence Analyses in a Phylogenetic Context

Description

Read multiple genome feature files into a tidy dataframe

Usage

readGFFs(
  input_frame,
  subset_mode = c("none", "goi_only", "foi_only", "goi_region", "foi_region",
    "name_check"),
  goi = NULL,
  foi = NULL,
  region_reach = 2e+05,
  concatenate_by_species = TRUE,
  concatenation_spacing = 10000,
  omit = NULL
)

Arguments

input_frame	A dataframe with columns: Genus_species, GFF_in_path, region_reach, concatenation_spacing
query	A .fa file containing the query
phylochem	The phylochem object to which the data should be bound

thebustalab/phylochemistry documentation built on Sept. 3, 2021, 5:06 a.m.