Man pages for thej022214/corHMM
Hidden Markov Models of Character Evolution
| ancRECON | Ancestral state reconstruction |
| ancRECON_slice | Ancestral state reconstruction for a particular time |
| ComputeCI | Compute confidence around rate estimates |
| ConvertPhangornReconstructions | Convert phangorn reconstruction to a vector |
| corDISC | Correlated evolution binary traits |
| corHMM | Hidden Rates Model |
| corHMMDredge | Automatic search for optimal discrete character model with... |
| corHMMDredgeBase | Hidden Rates Model with regularization with Penalization... |
| fitCorrelationTest | Test for correlation |
| get_batch_profile_lik | Perform Batch Profile Likelihood Analysis for Multiple... |
| getCVTable | Print Method for corhmm.kfold Class Objects |
| getFullMat | Combines several rate class index matrices |
| getModelTable | Summarize Model Statistics for a List of corHMM Objects |
| getRateMat4Dat | Produce an index matrix and legend from a dataset |
| kFoldCrossValidation | Perform K-Fold Cross-Validation for corHMM Models |
| makeSimmap | Simulate a character history |
| plot_batch_profile_lik | Plot Batch Profile Likelihoods |
| plotMKmodel | Plot a Markov model |
| plotRECON | Plot ancestral state reconstructions |
| primates | Example datasets |
| rayDISC | Evolution of categorical traits |
| simMarkov | Simulate a character on the tree |
| tipHomology | The Probability of a Tip State Being Homologous |
