ancRECON | Ancestral state reconstruction |
ancRECON_slice | Ancestral state reconstruction for a particular time |
ComputeCI | Compute confidence around rate estimates |
ConvertPhangornReconstructions | Convert phangorn reconstruction to a vector |
corDISC | Correlated evolution binary traits |
corHMM | Hidden Rates Model |
fitCorrelationTest | Test for correlation |
getFullMat | Combines several rate class index matrices |
getRateMat4Dat | Produce an index matrix and legend from a dataset |
makeSimmap | Simulate a character history |
plot_batch_profile_lik | Plot Batch Profile Likelihoods |
plotMKmodel | Plot a Markov model |
plotRECON | Plot ancestral state reconstructions |
primates | Example datasets |
rayDISC | Evolution of categorical traits |
simMarkov | Simulate a character on the tree |
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