Files in thej022214/corHMM

Hidden Markov Models of Character Evolution

.gitignore

DESCRIPTION

NAMESPACE

R/ancRECON.R R/confidence.R R/contour_plots.R R/convertPhangorn.R R/corDISC.R R/corHMM.R R/corHMMDredge.R R/dentist.R R/fitCorrelationTest.R R/makeSimmap.R R/plotMKmodel.R R/plotRECON.R R/rate.mat.maker.R R/rayDISC.R R/testCode.R

data/primates.paint.rda

data/primates.rda

data/rayDISC.example.rda

docs/404.html

docs/articles/corHMMv2.1-vignette.html

docs/articles/corHMMv2.1-vignette_files/figure-html/unnamed-chunk-10-1.png

docs/articles/corHMMv2.1-vignette_files/figure-html/unnamed-chunk-2-1.png

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docs/articles/corHMMv2.1-vignette_files/figure-html/unnamed-chunk-44-1.png

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docs/articles/corHMMv2.1-vignette_files/figure-html/unnamed-chunk-9-1.png

docs/articles/index.html

docs/authors.html

docs/bootstrap-toc.css

docs/bootstrap-toc.js

docs/docsearch.css

docs/docsearch.js

docs/index.html

docs/link.svg

docs/pkgdown.css

docs/pkgdown.js

docs/pkgdown.yml

docs/reference/ComputeCI.html

docs/reference/ConvertPhangornReconstructions.html

docs/reference/Rplot001.png

docs/reference/Rplot002.png

docs/reference/ancRECON.html

docs/reference/ancRECON_slice.html

docs/reference/corDISC.html

docs/reference/corHMM.html

docs/reference/fitCorrelationTest.html

docs/reference/getFullMat.html

docs/reference/getRateMat4Dat.html

docs/reference/index.html

docs/reference/makeSimmap.html

docs/reference/plotMKmodel-1.png

docs/reference/plotMKmodel-2.png

docs/reference/plotMKmodel.html

docs/reference/plotRECON-1.png

docs/reference/plotRECON.html

docs/reference/primates.html

docs/reference/rayDISC-1.png

docs/reference/rayDISC.html

docs/reference/simMarkov.html

docs/sitemap.xml

man/ComputeCI.Rd man/ConvertPhangornReconstructions.Rd man/ancRECON.Rd man/ancRECON_slice.Rd man/corDISC.Rd man/corHMM.Rd man/fitCorrelationTest.Rd man/getFullMat.Rd man/getRateMat4Dat.Rd man/makeSimmap.Rd man/plotMKmodel.Rd man/plotRECON.Rd man/plot_batch_profile_lik.Rd man/primates.Rd man/rayDISC.Rd man/simMarkov.Rd tests/testthat.R

tests/testthat/res_old.corhmm.Rsave

tests/testthat/testlikelihood.R

vignettes/corHMMResults.Rsave

vignettes/corHMMv2.1-vignette.Rmd vignettes/corHMMv2.1-vignette.pdf

vignettes/randomBD.tree

vignettes/simulatedData.Rsave

thej022214/corHMM documentation built on April 16, 2024, 2:27 a.m.