simMarkov: Simulate a character on the tree
In thej022214/corHMM: Hidden Markov Models of Character Evolution
simMarkov R Documentation
Simulate a character on the tree
Description
Simulates a character using an instanteous rate matrix, storing the states at nodes and at the tips of the tree.
Usage
simMarkov(phy, Q, root.freqs)
Arguments
phy
A phylogeny of class phylo.
Q
an instantaneous rate matrix.
root.freqs
A vector of root frequencies.
Details
This function will generate a character at tips and at interior nodes given a tree and Q matrix.
Value
A two element list containing 'TipStates' and 'NodeStates'
Author(s)
James D. Boyko
thej022214/corHMM documentation built on April 16, 2024, 2:27 a.m.
R Package Documentation
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| simMarkov | R Documentation |
Simulate a character on the tree
Description
Simulates a character using an instanteous rate matrix, storing the states at nodes and at the tips of the tree.
Usage
simMarkov(phy, Q, root.freqs)
Arguments
phy |
A phylogeny of class phylo. |
Q |
an instantaneous rate matrix. |
root.freqs |
A vector of root frequencies. |
Details
This function will generate a character at tips and at interior nodes given a tree and Q matrix.
Value
A two element list containing 'TipStates' and 'NodeStates'
Author(s)
James D. Boyko
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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