Man pages for thej022214/hisse
Hidden State Speciation and Extinction

bisse2hisseBisseToHisse
fGeoHiSSEfast Hidden Geographic State Speciation and Extinction
generateMiSSEGreedyCombinationsCombinations for Character-free State Speciation and...
GeoHiSSEHidden Geographic State Speciation and Extinction
GetAICWeightsCompute model weights
hisseHidden State Speciation and Extinction
hisse.newHidden State Speciation and Extinction
hisseNull4Four state trait-independent Hidden State Speciation and...
makeGeoHiSSELikelihoodExport likelihood function for the GeoHiSSE model
makeHiSSELikelihoodExport likelihood function for the HiSSE model
marginReconAncestral State Estimation based on Marginal Reconstruction
marginReconfGeoSSEfast Ancestral State Estimation based on Marginal...
marginReconfHiSSEfast Ancestral State Estimation based on Marginal...
marginReconGeoSSEAncestral State Estimation based on Marginal Reconstruction...
marginReconMiSSEAncestral State Estimation based on Marginal Reconstruction...
marginReconMuHiSSEAncestral State Estimation based on Marginal Reconstruction...
MiSSECharacter-free State Speciation and Extinction
MiSSEGreedyCharacter-free State Speciation and Extinction Searching...
modelAveEqFreqsModel average equlibrium frequencies
modelAveRatesModel average rates at tips and nodes
MuHiSSEMulticharacter Hidden State Speciation and Extinction
plotGeoHiSSEPlotting function geohisse.states objects
plotHissePlotting function hisse.states objects
plotMiSSEPlotting function geohisse.states objects
plotMuHiSSEPlotting function muhisse.states objects
simToPhyloConvert simulated result to a tree
SimulateGeoHiSSESimulate under a GeoHiSSE model
simulateHisseSimulate under a HiSSE model
supportRegionAdaptive Sampling of the Likelihood Surface
supportRegionfHiSSEAdaptive Sampling of the Likelihood Surface under the fast...
supportRegionGeoSSEAdaptive Sampling of the Likelihood Surface under GeoSSE
supportRegionMiSSEAdaptive Sampling of the Likelihood Surface under MiSSE
supportRegionMuHiSSEAdaptive Sampling of the Likelihood Surface under MuHiSSE
TranslateParsMakerGeoHiSSEKey to translate GeoHiSSE into ClaSSE
transMatTransition Rate matrix generator
transMatMakerfHiSSETransition Rate matrix generator for the fHiSSE model
transMatMakerGeoHiSSETransition Rate matrix generator for the GeoHiSSE model
transMatMakerMuHiSSETransition Rate matrix generator for the MuHiSSE model
thej022214/hisse documentation built on June 16, 2020, 4:52 p.m.