AddStratIntervals: Adds sampled stratigraphic intervals to a complete phylogeny

In thej022214/hisse: Hidden State Speciation and Extinction

Adds sampled stratigraphic intervals to a complete phylogeny

Description

Takes a sampled set of stratigraphic intervals from GeteStratigraphicIntervals and adds them as segments to a plot of the phylogeny from which they were sampled.

Usage

AddStratIntervals(phy, f, ...)

Arguments

phy	a complete phylogeny that includes both extant and extinct lineages.
f	the table of sampled lineages under the fossilized birth-death process obtained from GetFossils.
...	Additional parameters to control the points. See segments.

Author(s)

Jeremy M. Beaulieu

References

Vascancelos, T, B.C. O'Meara, and J.M. Beaulieu. In prep.

thej022214/hisse documentation built on Sept. 20, 2023, 12:40 a.m.