Files in thej022214/hisse
Hidden State Speciation and Extinction

.Rbuildignore
.travis.yml
DESCRIPTION
NAMESPACE
R/FindGenerations.R R/GenerateValues.R R/GetModelWeight.R R/bisse2hisse.R R/fgeohisse.R R/fhisse.R R/geohisse.R R/getModelAveEqFreqs.R R/getModelAveTipRates.R R/hisse.R R/hisseLikelihood.R R/hisseNull4.R R/marginRecon.R R/misse.R R/muhisse.R R/plotContMapHiSSE.R R/plotHisse.R R/simulateGeoHiSSE.R R/simulateHisse.R R/singleModels.R R/summarizeHisse.R R/supportRegion.R R/supportRegionGeoSSE.R R/supportRegionMiSSE.R R/supportRegionMuHiSSE.R R/supportRegionfHiSSE.R R/transMat.R R/transMatGeoHiSSE.R R/transMatMuHiSSE.R R/transMatfGeoHiSSE.R R/transMatfHiSSE.R README.md
docs/articles/.DS_Store
docs/articles/hisse-vignette_files/.DS_Store
docs/authors.html
docs/index.html
docs/link.svg
docs/pkgdown.css
docs/pkgdown.js
docs/reference/index.html
inst/CITATION
inst/extdata/conifers_reconlist.rda
man/GeoHiSSE.Rd man/GetAICWeights.Rd man/MiSSE.Rd man/MiSSEGreedy.Rd man/MuHiSSE.Rd man/SimulateGeoHiSSE.Rd man/TranslateParsMakerGeoHiSSE.Rd man/bisse2hisse.Rd man/fGeoHiSSE.Rd man/hisse.Rd man/hisse.new.Rd man/hisseNull4.Rd man/makeHiSSELikelihood.Rd man/marginRecon.Rd man/marginReconGeoSSE.Rd man/marginReconMiSSE.Rd man/marginReconMuHiSSE.Rd man/marginReconfGeoSSE.Rd man/marginReconfHiSSE.Rd man/modelAveEqFreqs.Rd man/modelAveRates.Rd man/plotGeoHiSSE.Rd man/plotHisse.Rd man/plotMiSSE.Rd man/plotMuHiSSE.Rd man/simToPhylo.Rd man/simulateHisse.Rd man/supportRegion.Rd man/supportRegionGeoSSE.Rd man/supportRegionMiSSE.Rd man/supportRegionMuHiSSE.Rd man/supportRegionfHiSSE.Rd man/transMat.Rd man/transMatMakerGeoHiSSE.Rd man/transMatMakerMuHiSSE.Rd man/transMatMakerfHiSSE.Rd
src/Makevars
src/bisse-ext-derivs.c
src/canonical-musse-ext-derivs.c
src/canonical_geosse-ext-derivs.c
src/fbisse-ext-derivs.c
src/fcanonical_geosse-ext-derivs.c
src/fgeohisse-ext-derivs.c
src/fhisse-ext-derivs.c
src/fnotclasse-ext-derivs.c
src/fnotclasse-more-ext-derivs.c
src/geohisse-ext-derivs.c
src/hisse-ext-derivs.c
src/hissenull-ext-derivs.c
src/misse-ext-derivs.c
src/muhisse-ext-derivs.c
src/notclasse-ext-derivs.c
src/notclasse-more-ext-derivs.c
src/registerDynamicSymbol.c
tests/testthat.R tests/testthat/test_likelihood.R tests/testthat/test_simulator.R
tests/testthat/whales_Steemanetal2009.tre
vignettes/Clade-specific-sampling.Rmd vignettes/Clade-specific-sampling.pdf vignettes/GeoHiSSE-vignette.Rmd vignettes/GeoHiSSE-vignette.pdf
vignettes/May2017_CID4_added_setsummaries.csv
vignettes/MiSSE-vignette.Rmd vignettes/MiSSE-vignette.pdf vignettes/MuHiSSE-vignette.Rmd vignettes/MuHiSSE-vignette.pdf
vignettes/cladeSamplingVariables.Rsave
vignettes/geohisse_recons_vignette.Rsave
vignettes/geohisse_vignette.Rsave
vignettes/hisse-fisse-type1-vignette.Rmd vignettes/hisse-fisse-type1-vignette.pdf vignettes/hisse-vignette.Rmd vignettes/hisse-vignette.pdf
vignettes/misse.support.Rsave
vignettes/misse.vignette.Rsave
vignettes/setCAQTipRatios.Rsave
vignettes/setKXHTipRatios.Rsave
vignettes/setMEVTipRatios.Rsave
vignettes/testrecon1.Rsave
vignettes/testrecon2.Rsave
vignettes/testrecon3.Rsave
vignettes/whales_Steemanetal2009.tre
thej022214/hisse documentation built on Sept. 11, 2019, 5:47 p.m.