signatureEnrichment: Performs sample stratification based on signature...

In thesushantpatil/maftools: Summarize, Analyze and Visualize MAF Files

Description

Performs k-means clustering to assign signature to samples and performs enrichment analysis.

Usage

signatureEnrichment(maf, sig_res, minMut = 5, useCNV = FALSE, fn = NULL)

Arguments

maf	an MAF object used for signature analysis.
sig_res	Signature results from extractSignatures
minMut	Consider only genes with minimum this number of samples mutated. Default 5.
useCNV	whether to include copy number events. Only applicable when MAF is read along with copy number data. Default TRUE if available.
fn	basename for output file. Default NULL.

Value

result list containing p-values

See Also

plotEnrichmentResults

thesushantpatil/maftools documentation built on May 18, 2020, 9:54 p.m.