Files in thibautjombart/OutbreakTools
Basic Tools for the Analysis of Disease Outbreaks

.Rbuildignore
.gitignore
.travis.yml
ChangeLog
DESCRIPTION
NAMESPACE
R/OutbreakTools.R R/annotatedTreeReader.R R/auxClasses.R R/dna2uniqSequences.R R/generics.R R/get.incidence.R R/importFromJSON.R R/make.attributes.R R/make.phylo.R R/obkContacts.R R/obkData.R R/obkData_Accessors.R R/obkData_basics.R R/obkSequences.R R/phylo2ggphy.R R/plot.R R/plotGeo.R R/plotIndividualTimeline.R R/plotggMST.R R/plotggphy.R R/simuEpi.R R/subset.R R/uniqSequences.R R/utils.R R/zzz.R README.md
TITLE
data/FluH1N1pdm2009.RData
data/HorseFlu.RData
data/HorseFluRaw.RData
data/ToyOutbreak.RData
data/ToyOutbreakRaw.RData
inst/files/BEAST-expl.nex
man/FluH1N1pdm2009.Rd man/HorseFlu.Rd man/HorseFluRaw.Rd man/OutbreakTools.package.Rd man/ToyOutbreak.Rd man/ToyOutbreakRaw.Rd man/annotatedTreeReader.Rd man/auxClasses.Rd man/dna2uniqSequences.Rd man/get.data.Rd man/get.dates.Rd man/get.incidence.Rd man/get.individuals.Rd man/importFromJSON.Rd man/make.attributes.Rd man/make.phylo.Rd man/obkContacts.Rd man/obkData.Rd man/obkDataPlot.Rd man/obkSequences.Rd man/phylo2ggphy.Rd man/phylofromtranstree.Rd man/plotEpi.Rd man/plotGeo.Rd man/plotIndividualTimeline.Rd man/plotggMST.Rd man/plotggphy.Rd man/simuEpi.Rd man/subset.Rd man/uniqSequences.Rd
misc/BEAST-expl.nex
misc/FakeInfluenza.RData
misc/FakeInfluenza.Rd
misc/FakeSarsHK2003.RData
misc/FakeSarsHK2003.Rd
misc/FluH1N1pdmExample.R
misc/H3_WD_n1000_GTRGI_E_skyline.trees_subst_MCC.txt
misc/H3_WD_n1000_GTRGI_E_skyline.trees_time_MCC.txt
misc/HorseFluOutbreak.RData
misc/ISOdate_format.R
misc/SarsSingapore2003.RData
misc/SarsSingapore2003.Rd
misc/annotated_example.R misc/bestroot.R misc/classes.old.R misc/createRData.R misc/demo.push2d3.R
misc/epibase.Rnw
misc/get.incidence.Rd misc/ggplot2_example.R misc/obkClinicalEvent.R
misc/obkClinicalEvent.Rd
misc/plot_ggphy_test.R misc/plotggphyExample.R
misc/rabies.RData
misc/rabies.Rd
misc/roxygen.R
misc/sciencegallery.RData
misc/sciencegallery.Rd
misc/shedding_example.R misc/simSIRmodel.R misc/simSIRmodelKenah2008.R misc/supgma.R
vignettes/OutbreakTools.Rnw
thibautjombart/OutbreakTools documentation built on Oct. 5, 2017, 3:06 p.m.