dna2uniqSequences: Convert a DNAbin with duplicated sequences to the class...

In thibautjombart/OutbreakTools: Basic Tools for the Analysis of Disease Outbreaks

Description

Function to convert a DNAbin from the class 'DNAbin' to the class 'uniqSequences'

Usage

  dna2uniqSequences(dna)

Arguments

dna	an object of the class "DNAbin"

Author(s)

Joseph Hughes

Examples

### get uniq sequences for individual 49

data(HorseFlu)
x <- HorseFlu

### create a subset DNAbin
id49 <- subset(x,individuals="49") # warning message is returned
dna49 <- get.dna(id49)[[1]]

### get a particular sequence id with summary.seq$uniqseqID4[5]
### get number of sequences length(summary.seq$uniqseqID4)
uniqdna49 <- dna2uniqSequences(dna49)

thibautjombart/OutbreakTools documentation built on Oct. 26, 2019, 10:56 p.m.