phylo2ggphy: Convert phylogenies from the class 'phylo' to the class...
In thibautjombart/OutbreakTools: Basic Tools for the Analysis of Disease Outbreaks
Description
Usage
Arguments
Author(s)
Description
Function to convert phylogenies from the class 'phylo' to
the class 'ggphy'
Usage
1
2
phylo2ggphy(phylo, tip.dates = NULL, branch.unit = NULL,
verbose = FALSE)
Arguments
phylo
an object of the class "phylo"
tip.dates
a vector containing the sample dates of
the tip in "Date" format, the dates must be ordered like
the tips
branch.unit
the unit of the branch. Either "year",
"month", "day" or "subst". If a time unit is provided,
together with tip.dates, then the x-axis of the phylogeny
will be in the Date format
verbose
if TRUE additional information is
provided at execution
Author(s)
Anton Camacho
thibautjombart/OutbreakTools documentation built on Oct. 26, 2019, 10:56 p.m.
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Description Usage Arguments Author(s)
Description
Function to convert phylogenies from the class 'phylo' to the class 'ggphy'
Usage
1 2 | phylo2ggphy(phylo, tip.dates = NULL, branch.unit = NULL,
verbose = FALSE)
|
Arguments
phylo |
an object of the class "phylo" |
tip.dates |
a vector containing the sample dates of the tip in "Date" format, the dates must be ordered like the tips |
branch.unit |
the unit of the branch. Either "year", "month", "day" or "subst". If a time unit is provided, together with tip.dates, then the x-axis of the phylogeny will be in the Date format |
verbose |
if |
Author(s)
Anton Camacho
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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