bregs: Sequencing data in chord blood from mothers.

In thierrycnam/igfuns: Analyzes of Ig sequencing data

Description

A dataset containing the molecular characterization information of antibody sequences

Usage

bregs

Format

A data frame with 801 rows and 28 variables:

name

sequence name

chain_type

type of the chain, either heavy or light

vh

V-gene information, with subfamily

dh

D-gene information, with subfamily

jh

J-gene information, with subfamily

evalue

blast evalue, les than 10e-3 is good

strand

DNA strand, either '+' or '-'

fr1

FR1 sequence, in AA

cdr1

CDR1 sequence, in AA

fr2

FR2 sequence, in AA

cdr2

CDR2 sequence, in AA

fr3

FR3 sequence, in AA

cdr3

CDR3 sequence, in AA

fr4

FR4 sequence, in AA

pos_ch_cdr3

number of positive charges in CDR3

neg_ch_cdr3

number of negative charges in CDR3

gravy_cdr3

hydrophobicity in CDR3

pos_ch_vreg

number of positive charges in V-Region

neg_ch_vreg

number of negative charges in V-Region

gravy_vreg

hydrophobicity in V-Region

length

CDR3 length, in nt

length_v

V-REGION length, in nt

mutations

number of mutations in the V-region

b_cell_subset

b_cell_subset

sample

the sample

compartment

the compartment

v

v gene - Family only

j

j gene - Family only

Source

http://www.diamondse.info/

thierrycnam/igfuns documentation built on May 4, 2020, 3:21 a.m.