sc_lb: single cell data
In thierrycnam/igfuns: Analyzes of Ig sequencing data

Description Usage Format

This dataset contains mutations, V-gene family, sample ID, number of mutations and germline divergence score. V mutations div_germ sample status label_subtype

sc_lb

A data frame with 623 rows and 35 variables

alnstart: alignemnt start on the subject
b_cell_subset: b_cell_subset
cdr1: CDR1 sequence, in AA
cdr1_seq: CDR1 sequence, in nt
cdr2: CDR2 sequence, in AA
cdr2_seq: CDR2 sequence, in nt
cdr3: CDR3 sequence, in AA
cdr3_seq: CDR3 sequence, in nt
chain_type: type of the chain, either heavy or light
compartment: the compartment
dh: D-gene information, with subfamily
dh2: D-gene information, 2 digits precision (allele information)
evalue: blast evalue, les than 10e-3 is good
fr1: FR1 sequence, in AA
fr1_seq: FR1 sequence, in nt
fr2: FR2 sequence, in AA
fr2_seq: FR2 sequence, in nt
fr3: FR3 sequence, in AA
fr3_seq: FR3 sequence, in nt
fr4: FR4 sequence, in AA
fr4_seq: FR4 sequence, in nt
inframe: is the CDR3 stop IN-FRAME
jh: J-gene information, with subfamily
jh2: J-gene information, 2 digits precision (allele information)
length: CDR3 length, in nt
mutations: number of mutations in the V-region
name: sequence name
sample: sample code
status: status of the patient, early-treated (PHI) or late-treated (CHI)
stop: stop codon, boolean YES or NO
strand: DNA strand, either '+' or '-'
vh: V-gene information, with subfamily
vh2: V-gene information, 2 digits precision (allele information)
wgxg: mask to state wether the CDR3 is well defined or not, boolean YES or NO
wgxg_2: mask to state wether the CDR3 is well defined or not [this delimitation is not IN-FRAME], boolean YES or NO