Man pages for thijsjanzen/enviDiv
| calc_sum_stats | calculate summary statistics for a focal tree. The following... |
| create_reference_table | function to perform ABC-SMC |
| create_ref_table_tbb_par | simulate a tree using environmental diversification |
| create_ref_table_tbb_serial | simulate a tree using environmental diversification |
| create_tree_cpp | simulate a tree using environmental diversification |
| generate_from_prior | function to perform ABC-SMC |
| generate_naive | function to perform ABC-SMC |
| generate_stack | function to perform ABC-SMC |
| generate_trees_tbb | function to perform ABC-SMC |
| generate_water | Generate a sequence of waterlevel changes, depending on the... |
| get_waterlevel_cpp | draw water level change2 |
| infer_params_abcrf | infer parameter values |
| ltable_to_phylo | export from DDD package, returns newick instead of tree |
| ltab_to_ltable_to_phylo | internal ltab to ltable to phylo |
| param_from_prior | draw parameter combinations from the prior |
| param_from_prior_cpp | draw parameter combinations from the prior |
| param_from_prior_exp | draw parameter combinations from the prior |
| param_from_prior_exp_cpp | draw parameter combinations from the prior |
| read_reference_table | collect reference table based on previously generated... |
| sim_envidiv_tree | simulate a tree using the environmental diversification model |
| sim_table_to_newick | function to transform an Ltable to a newick string. Calls... |
| sim_table_to_phy | function to transform an Ltable to a phylogeny |
| sq_numbers_cpp_tbb | test multithreaded works! |
| test_envidiv_tbb | function to test table conversion |
