generate_naive: function to perform ABC-SMC

In thijsjanzen/enviDiv:

function to perform ABC-SMC

Description

function to perform ABC-SMC

Usage

generate_naive(
  number_of_particles = 1000,
  min_tips = 50,
  max_tips = 150,
  model = -1,
  emp_tree = NULL,
  crown_age = NULL,
  write_to_file = FALSE,
  file_name
)

Arguments

number_of_particles	number of particles used per iteration of the SMC algorithm
min_tips	minimum number of tips
max_tips	maximum number of tips
model	used water model
emp_tree	phy object holding phylogeny of the tree to be fitted on
crown_age	crown age
write_to_file	boolean, if TRUE, results are written to file.
file_name	file name

Value

a tibble containing the results

thijsjanzen/enviDiv documentation built on Feb. 17, 2025, 8:20 p.m.