Files in thijsjanzen/nodeSub
Simulate DNA Alignments Using Node Substitutions
.Rbuildignore
.github/.gitignore
.github/workflows/R-CMD-check.yaml
.github/workflows/simple.yml
.github/workflows/test-coverage.yaml
.gitignore
DESCRIPTION
NAMESPACE
R/RcppExports.R
R/calc_rel_contr_node_time.R
R/calc_summary_statistics.R
R/count_hidden.R
R/create_equal_alignment.R
R/create_equal_alignment_explicit.R
R/create_tree_from_brts.R
R/estimate_marginal_models.R
R/infer_phylogeny.R
R/nodeSub.R
R/sim_linked.R
R/sim_normal.R
R/sim_normal_explicit.R
R/sim_unlinked.R
R/sim_unlinked_explicit.R
R/util.R
README.md
Vignettes/substitution_models.Rmd
codecov.yaml
man/calc_expected_hidden_nodes.Rd
man/calc_fraction.Rd
man/calc_required_node_time.Rd
man/calc_sum_stats.Rd
man/count_hidden.Rd
man/create_balanced_tree.Rd
man/create_equal_alignment.Rd
man/create_equal_alignment_explicit.Rd
man/create_unbalanced_tree.Rd
man/estimate_marginal_models.Rd
man/get_p_matrix.Rd
man/infer_phylogeny.Rd
man/nodeSub-package.Rd
man/reduce_tree.Rd
man/sim_linked.Rd
man/sim_normal.Rd
man/sim_normal_explicit.Rd
man/sim_unlinked.Rd
man/sim_unlinked_explicit.Rd
man/slow_matrix.Rd
nodeSub.Rproj
pics/Codecov.png
pics/nodesub_sticker.png
src/Makevars
src/RcppExports.cpp
src/getP.cpp
src/nodeSub.dll
tests/testthat.R
tests/testthat/.Rapp.history
tests/testthat/test-calc_fraction.R
tests/testthat/test-count_hidden.R
tests/testthat/test-create_equal_alignment.R
tests/testthat/test-relative_node_time.R
tests/testthat/test-sim_linked.R
tests/testthat/test-sim_normal.R
tests/testthat/test-sim_normal_explicit.R
tests/testthat/test-sim_unlinked.R
tests/testthat/test-sim_unlinked_explicit.R
tests/testthat/test-substitution.R
tests/testthat/test-sum-stats.R
