Description Objects from the Class Slots Extends Methods Author(s) See Also
This class combines Peaklist
object with different types of ID lists (only PepID
objects currently supported), matching ID to the quantified peakgroups
Objects can be created using the complist
constructor which automatically links ID's to peakgroups.
Furthermore the wrapper function createComplist
will also output a Complist
object.
Objects can also be created by calls of the form new("Complist", ...)
.
peakID
:A logical data frame giving the peakgroups that have been matched to ID
IDindex
:A list giving the mathc between ID and peakgroups
pepID
:The PepID
object used
raw
:A matrix containing the intensities of each sample for all peakgroups
Sample.info
:A data frame containing information on each sample
Peak.info
:A data frame containing chromatographic information for each peak group
annotated
:TRUE/FALSE giving whether CAMERA analysis has been performed on data
parameters
:A Parameters
object containing all different analysis parameters used
Class "Peaklist"
, directly.
signature(object = "Complist")
: Extract intensity for all ID'ed peak groups or a specific ID
signature(object = "Complist")
: Plot EIC for a given ID
Thomas Dybdal Pedersen
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