complist: Merge Peaklist And Compound ID
In thomasp85/pepmaps: Create peptide maps by merging xcms (and CAMERA) with MassAI

Description Usage Arguments Details Value Author(s) See Also

This function creates a Complist object by automatically matching a Peaklist object to a PepID object. A wider matching window can optionally be defined.

1	complist(Peaklist, PepID, rtwin = 0, mzwin = 0)

`Peaklist`	The `Peaklist` object containing peak groups from a xcms analysis
`PepID`	The `PepID` object with identified peptides
`rtwin`	Extension of the matching window in the retention time direction
`mzwin`	Extension of the matching window in the mz direction

The constructor compares the mean retention time and mz values of the ID object to the minimum and maximum retention time and mz values for the peak groups. One ID can be matched to several peak groups and one peak group can be matched to several ID's if the complexity of the sample is higher than the resolving power of the LC-MS.

A Complist object.

Thomas Dybdal Pedersen

Complist, getIntensity

thomasp85/pepmaps documentation built on May 31, 2019, 11:15 a.m.