PepID-class: Class '"PepID"'

In thomasp85/pepmaps: Create peptide maps by merging xcms (and CAMERA) with MassAI

Description

This class contains output from peptide indentfication by either Crosswork or MassAI.

Objects from the Class

Objects can be created using the pepID constructor. Objects can also be created by calls of the form new("PepID", type, raw).

Slots

type:

A character string giving the type of object(either 'Crosswork' or 'MassAI')

raw:

A data frame containing the raw results from the peptide identification

peplist:

A data frame containing an overview of each unique identified peptide

npep:

The number of unique identified peptides

nsample:

The number of samples used in the analysis

Methods

evalID

signature(object = "PepID"): Bootstrap estimation of the number of peptides identified as a function of the number of samples used.

Author(s)

Thomas Dybdal Pedersen

References

Download MassAI or Crosswork

See Also

pepID

thomasp85/pepmaps documentation built on May 31, 2019, 11:15 a.m.