boundsGamma | Upper limit for overall mutation rate |
distLRR | Find summary statistics of LRR |
expectedMutationRate | Expected mutation rate of a mutation matrix |
findReversible | Find reversible mutation matrix |
fratio | Calculates fratio |
lik2 | Pairwise likelihood with mutation |
mut2 | mut2: Transforming mutation models to reversibility |
mut2-package | mut2: Mutation stuff |
simLRR | Simulate LRR |
snpExample | SNP example |
tabfRatio | Produce table comparing transformations |
tabLRR | Produce table comparing transformations based on simulations |
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