expectedMutationRate: Expected mutation rate of a mutation matrix

In thoree/mut2: Reversible mutation matrices and pairwise likelihood ratios

Expected mutation rate of a mutation matrix

Description

Expected mutation rate of a mutation matrix

Usage

expectedMutationRate(mutmat, afreq, check = TRUE)

Arguments

mutmat	A mutation matrix.
afreq	A vector with allele frequencies of the same length as the size of mutmat.
check	Logical.

Value

Expected mutation rate.

Author(s)

Thore Egeland

Examples

library(pedmut)
n = 4
p= 1:n/sum(1:n)
names(p) = 1:n
mutmat = mutationMatrix("onestep", rate = 0.02, afreq = p, alleles = 1:n)
expectedMutationRate(mutmat, afreq = p)

thoree/mut2 documentation built on May 16, 2023, 7:56 p.m.